![]() ![]() Formal schemas describing the syntax of SBML, as well as other materials and software, are available from the SBML project web site. This document contains many examples of SBML models written in XML. SBML is defined neutrally with respect to programming languages and software encoding however, it is oriented primarily towards allowing models to be encoded using XML, the eXtensible Markup Language ( Bray et al., 2004). SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. This document defines Version 1 of the Systems Biology Markup Language (SBML) Level 3 Core, an electronic model representation format for systems biology. Other materials and software are available from the SBML project web site. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This document provides the specification for Version 1 of SBML Level 3 Core. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. ![]()
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